biology biological engineering

On Microanalytical Methods

On Mechanics of the Cytoskeleton

121.              Y-H Ha, R.A. Vaia, W.F. Lynn, J.P. Constantino, J.H. Shin, A.B. Smith, P.T. Matsudaira, and E.L. Thomas, "Top-Down Engineering of Natural Photonic Crystals: Cyclic Size Reduction of Sea Urchin Stereom" Advanced Materials. Online (2004).
119.              Gardel, M.L., J.H. Shin, F.C. MacKintosh, L. Mahadevan, P. Matsudaira and D.A. Weitz, Elastic behavior of Cross-Linked and Bundled Actin Networks. Science 304: 1301-1305 (2004).
118.              Shin, J.H., L. Mahadevan, P. T. So,  P. Matsudaira, Bending stiffness of a crystallized actin bundle. J. Mol. Biol. 337: 255-261 (2004).
117. Lodish, Berk, Matsudaira, Kaiser, Krieger, Scott, Zipursky, and Darnell. Molecular Biology of the Cell, 5th edition, W.H. Freeman (2003).
116.              Evans, J.G., Correia, I., Krasavina. O., Watson, N. and P. Matsudaira. Macrophage podosomes assemble at the leading lamella by growth and fragmentation. J. Cell Biol 161: 697-705 (2003).
115.              Shin, J., Mahadevan, L., Waller, G., Langsetmo, K., and P. Matsudaira. Stored elastic energy powers the 60 micrometre extension of the Limulus polyphemus sperm actin bundle". J.Cell Biol. 162: 1183-1188 (2003).
114.              Goodman, A., Goode, B.L., Matsudaira, P., Find, G., The Saccharomyces cerevisiae calponin/transgelin homolog Scp1 functions with fimbrin to regulate stability and organization of the actin cytoskeleton. Mol Biol Cell 7: 2617-2629. (2003).
105.              Volkmann, N., DeRosier, D., Matsudaira, P., and Hanein, D. An Atomic Model of Actin Filaments Crosslinked by Fimbrin and its Implications for Bundle Assembly and Function. J. Cell Biol. 153: 947-956 (2001).
104.              Choe, S.E., Li, L. Matsudaira, P.T., Wagner, G., Shakhnovich, E.I. Structure of the Transition State for the Folding of Villin 14T, a Protein Domain with Two Hydrophobic Cores, J. Mol. Biol. 304:99-115 (2000).
103.              Mahadevan, L., Matsudaira, P. Motility Powered by Supramolecular Springs and Ratchets, Science 288:95-99 (2000).
100.              Li, W., Wang, J., Coluccio, L., Matsudaira, P., Grand, R. Brush Border Myosin I (BBMI): A Basally Localized Transcript in Human Jejunal Enterocytes. J. of Histochemistry & Cytochemistry 48:89-94, (2000).
99.                 Lodish, Berk, Zipursky, Matsudaira, Baltimore, and Darnell. Molecular Biology of the Cell, 4th edition, W.H.Freeman (1999).
93.                 Correia, I., Chu, D., Chou, Y-H., Goldman, R.D., and Matsudaira, P.T. Integrating the Actin and Vimentin Cytoskeletons: Adhesion-dependent Formation of Fimbrin-vimentin Complexes in Marophages. J. Cell Biol. 128:831-842 (1999).
90.                 Sherman, M.B., Jakana, J., Sun, S., Matsudaira, P.T., Chiu, W. and Schmid, M.F., The Three-Dimensional Structure of a Dynamic Actin Bundle, the Limulus Acrosomal Process. J. Mol. Biol. 294:139-149 (1999).
88.                 Choe, S.E., Matsudaira, P.T., Osterhout, J., Wagner, G., and Shaknovich, E.I. Folding Kinetics of Villin 14T, A Protein Domain with a Central Beta-Sheet and Two Hydrophobic Cores. Biochemistry 37:14508-14518 (1998).
87.                 Hanein, D., Volkmann, N., Goldsmith, S., Michon, A-M., Lehman, W., Craig, R., DeRosier, D., Almo, S., and Matsudaira, P.T., An Atomic Model of Fimbrin binding to F-actin and It's Implications for Filament Crosslinking and Regulation. Nature Struct. Biol. 5:787-792 (1998).
84.                 Sherman, M.B., Jakana, J., Sun, S., Matsudaira, P.T., Chiu, W., and Schmidt, M.F. A Strategy for Electron Tomographic Data Collection and Crystallographic Reconstruction of Biological Bundles. J. Structural Biol. 120:245-256 (1997).
83.                 Ono, S., Yamakita, Y., Yamashiro, S., Matsudaira, P.T., Gnarra, J.R., Obinata, T., Matsumura, F. Identification of an Actin Binding Region and a Protein Kinase C Phosphorylation Site on Human Fascin. J. Biol. Chem. 272:2527-33 (1997).
81.                 Goldsmith, S., Pokala, N., Shen, W., Fedorov, A.A., Matsudaira, P.T., and Almo, S.A. The Structure of an Actin-crosslinking Domain from Human Fimbrin. Nature Struct. Biol. 4:708-712 (1997).
80.                 Markus, M., Matsudaira, P.T., Wagner, G. Refined Structure of Villin 14T and a Detailed Comparison with Other Actin-severing Domains. Prot. Science 6:1197-1209 (1997).
79.                 Goldsmith, S., Pokala, N., Matsudaira, P.T., and Almo, S. Crystallization and Preliminary Crystallographic Analysis of the N-Terminal Actin Binding Domain of Human Fimbrin. Proteins: Structure, Function, and Genetics 28:452-3 (1997).
78.                 Hanein, D., Matsudaira, P.T., and DeRosier, D. Evidence for a Conformational Change in Actin Induced by Fimbrin (N375) Binding. J. Cell Biol. 139: 387-396 (1997).
77.                 McKnight, C.J., Matsudaira, P.T., and Kim, P.S. NMR Structure of the 35-Residue Villin Headpiece Subdomain. Nature Struc. Biol. 4:180-184 (1997).
76.                 Wang, Z-Y, Sakai, J., Matsudaira, P.T., Baines, I.C., Hammer, J.A., and Korn, E. The Amino Acid Sequence of the Light Chain of Acanthamoeba Myosin IC. J. Muscle Res. and Cell Motil. 18:395-398 (1997).
75.                 Babb, S.G., Matsudaira, P.T., Sato, M., Correia, I., and Lim, S-S. Fimbrin in Podosomes of Monocyte-Derived Osteoclasts. Cell Motil. Cytoskel. 37:308-325 (1997).
74.                 Sun, S., Footer, M., and Matsudaira, P.T. Modification of Cys-837 Identifies an Actin-binding Site in the B-Propeller Protein Scruin. Molec. Biol. of the Cell 8:421-430 (1997).
73.                 Doering, D.S. and Matsudaira, P.T. Cysteine Scanning Mutagensis at 40 of 76 Positions in Villin Headpiece Maps the F-actin Binding Site and Structural Features of the Domain. Biochem. 35:12677-12685. (1996).
72.                 McKnight, C.J., Doering, D.S., Matsudaira, P.T., and Kim, P.S. A Thermostable 35-Residue Subdomain within Villin Headpiece. JMB 260:126-134 (1996).
71.                 Durrbach, A., Collins, K., Matsudaira, P.T., Louvard, D., and Coudrier, E. Brush Border Myosin-I Truncated in the Motor Domain, Impairs the Distribution and the Function of Endocytic Compartments in an Hepatoma Cell Line. PNAS 93:7053-7058 (1996).
70.                 Markus, M.A., Kwaku, D.T., Matsudaira, P.T., and Wagner, G. Local Mobility within Villin 14T Probed via Heteronuclear Relaxation Measurements and a Reduced Spectral Density Mapping. Biochem. 35:1722-1732 (1996).
69.                 Footer, M., Egholm, M., Kron, S., Coull, J.M., and Matsudaira, P.T. Biochemical Evidence that a D-loop is Part of a Four-stranded PNA-DNA Complex. Nickel-Mediated Cleavage of Duplex DNA by a gly-gly-his bis PNA. Biochem. 35:10673-10679 (1996).
68.                 Sanders, M., Way, M., Sakai, J., and Matsudaira, P.T. Characterization of the Actin Crosslinking Properties of the Scruin-Calmodulin Complex from the Acrosomal Process of Limulus sperm. J. Biol. Chem. 271:2651-2657 (1996).
67.                 Schmidt, M., Janka, J., Chiu, W., and Matsudaira, P.T. A 7-Å Projection Map of Frozen, Hydrated Acrosomal Bundle from Limulus Sperm. J. Struc. Biol 115:209-213 (1995).
66.                 Meltzer, P.C., Liang, A.Y., and Matsudaria, P.T. Peptide Nucleic Acids: Synthesis of Thymine, Adenine, Guanine, and Cytosine Nucleobases. J. Organ. Chem. 60:4305-8 (1995).
65.                 Way, M., Sanders, M.C., Chafel, M., Tu, Y-H., Knight, A., and Matsudaira, P.T. ß-Scruin, A Homologue of the Actin Crosslinking Protein Scruin, is Localized to the Acrosomal Vesicle of Limulus Sperm. J. Cell Sci. 108:3155-3162 (1995).
64.                 Collins, K. and Matsudaira, P.T. Recombinant Expression of the Brush Border Myosin I Heavy Chain. Cell Motil. and the Cytoskel. 32:151-161 (1995).
63.                 Schmidt, M., Jakana, J., Matsudaira, P.T., and W.Chiu, Three-Dimentional Structure of the Acrosomal Filament of Limulus Sperm by 400 kV Electron Cryomicroscopy. Biophysical Journal 68:8s-11s (1995).
62.                 Matsudaira, P. Intrahelical Ion Pairs in Intermediate Filaments. PNAS 92:86 (1995).
60.                 Chafel, M., Shen, W., and Matsudaira, P.T. Sequential Expression and Differential Localization of I, L, and T-Fimbrin during Differentiation of the Mouse Intestine and Yolk Sac. Developmental Dynamics 203:141-151 (1995).
59.                 Way, M., Sanders, M., C. Garcia, J. Sakai, and Matsudaira, P.T. Sequence and Domain Organization of Scruin, an Actin-Crosslinking Protein in the Acrosomal Process of Limulus Sperm. J. Cell Biol. 128:51-60 (1995).
58.                 Lodish, Darnell, Burke, Zipursky, Matsudaira and Baltimore, Molecular Biology of the Cell, 3rd edition, W.H.Freeman (1995).
57.                 Matsudaira, P.T. The Fimbrin and Alpha-Actinin Footprint on Actin. J. Cell Biol. 126:285-287 (1994).
56.                 Markus, M.A., Dayie, K.T., Matsudaira, P.T., Wagner, G. Effect of Deuteration on the Amide Proton Relaxation Rates in Proteins: Heteronuclear NMR Experiments on Villin 14T. J. Magnetic Resonance 105:192-195 (1994).
55.                 Adams, A., Shen, W., Lin, C.S., Leavitt, J., and Matsudaira, P.T. Isoform-specific Complementation of the Yeast sac6 null Mutation by Human Fimbrin. Mol. Cell Biol. 15:69-75 (1994).
54.                 Mosialos, M., Yamashiro, S., Baughman, R., Matsudaira, P.T., Vara, L., Matsumura, F., Kieff, E., and Birkenbach, M. Epstein-Barr Virus Infection Induces Expression in B Lymphocytes of a Novel Gene Encoding an Evolutionarily Conserved 55-Kilodalton Actin-Bundling Protein. Journal of Virology 68:7320-7328 (1994).
53.                 Gabuzda, D.H., Busciglio, J., Chen, L.B., Matsudaira, P.T., and Yankner, B. Inhibition of Energy Metabolism Alters the Processing of Amyloid Precursor Protein and Induces a Potentially Amyloidogenic Derivative. J. Biol.Chem. 269:13623-8 (1994).
52.                 Markus, M.A., Nakayama, T., Matsudaira, P.T., and Wagner, G. 1H, 15N, 13C, and 13CO Resonance Assignments and Secondary Structure of Villin 14T, a Domain Conserved Among Actin-Severing Proteins. J. of Biomol. NMR 4:553-574 (1994).
51.                 Matsudaira, P.T. Actin crosslinking proteins at the leading edge. Sem. in Cell Biol., Vol. 5:165-174 (1994).
50.                 Pope, B., Way, M., Matsudaira, P.T., and Weeds, A. Characterisation of the F-actin binding domains of villin: classification of F-actin binding proteins into two groups according to their binding sites on actin. FEBS Letters 338:58-62 (1994).
49.                 Markus, M.A., Nakayama, T., Matsudaira, P.T., and Wagner, G. Solution Structure of Villin 14T, a Domain Conserved Among Actin-Severing Proteins. Protein Science 3:70-81 (1994).
48.                 Van Etten, R., Jackson, P., Baltimore, D., Sanders, M.S., Matsudaira, P.T., and Janmey, P.A. The COOH Terminus of the cAbl Tyrosine Kinase Contains Distinct F-actin and G-actin Binding Domains with Bundling Activity. J. Cell Biol. 124:325-340 (1994).
47.                 de Arruda, M.V., and Matsudaira, P.T. Cloning and Sequencing of the Leishmania major Actin-encoding Gene. Gene 139:123-125 (1994).
46.                 Lin, C.S., Shen, W., Chen, Z.P., Tu, Y., and Matsudaira, P.T. Identification of I-Plastin, a Human Fimbrin Isoform Expressed in Intestine and Kidney, Mol. Cell. Biol. 14:4:2457-2467 (1994).
45.                 Schmid, M.F., Agris, J., Jakana, J., Matsudaira, P.T., and Chiu, W. Three- Dimensional Structure of a Single Filament in the Limulus Acrosmal Bundle: Scruin Binds to Homologous Helix-Loop-Beta Motifs in Actin. J. Cell Biol. 124:341-350 (1994).
44.                 Way, M., and Matsudaira, P.T. The Secrets of Severing? Current Biol., Cytoskeletal Dynamics, 3:887-890 (1993).
43.                 Messier, J.M., Shaw, L.M., Chafel, M., Matsudaira, P.T., and Mercurio, A.M. Fimbrin Localized to an Insoluble Cytoskeletal Fraction is Constitutively Phosphorylated on Its Headpiece Domain in Adherent Macrophages. Cell Motil. Cytoskeleton, 25:223-233 (1993).
41.                 Bryan, J., Edwards, R., Matsudaira, P.T., Otto, J., and Wulfkuhle, J. Fascin, an Echinoid Actin-Bundling Protein, is a Homolog of the Drosophila singed Gene Product, PNAS 90:9115-9119 (1993).
40.                 Schmid, M.F., Jakana, J., Matsudaira, P.T., and Chiu, W. Imaging Frozen, Hydrated Acrosomal Bundle from Limulus Sperm at 7 A Resolution with a 400 kV Electron Cryomicroscope. J. Mol. Biol. 230:384-386 (1993).
39.                 Conrad, P.A., Giuliano, K.A., Collins, K., Matsudaira, P.T., and Taylor, D.L. Relative Distribution of Actin, Myosin I, and Myosin II During the Wound Healing Response of Fibroblasts. J. Cell Biol. 120:1381-91(1993).
38.                 Busciglio, J., Gabuzda, D.H., Matsudaira, P.T., and Yankner B.A.. Generation of Beta-Amyloid in the Secretory Pathway in Neuronal and Nonneuronal Cells. PNAS 90:2092-6 (1993).
37.                 De Mendonca Neto, E.C., Kumar, A., Michon, A.-M., Matsudaira, P.T., Eaton, R.B., and Schur, P.H. Antibodies to T- and L- Isoforms of the Cytoskeletal Protein, Fimbrin, in Patients with Systemic Lupus Erythematosus. J. Clin. Invest. 90:1037-1042 (1992).
36.                 Janmey, P.A., Lamb, J., Allen, P.G., and Matsudaira, P.T.  Phosphoinositide-binding Peptides Derived from the Sequences of Gelsolin and Villin. J. Biol. Chem. 267:11818-11823 (1992).
35.                 de Arruda, M. V., Bazari, H., Wallek, M., and Matsudaira, P.T. An Actin Footprint on Villin: Single Site Substitutions in a Cluster of Basic Residues Inhibit the Actin Severing but not Capping Activity of Villin. J. Biol. Chem. 267:13079-13085 (1992).
34.                 Ezzell, R.M., Leung, J., Collins, K., Chafel, M.M., Cardozo, T.J., and Matsudaira, P.T. Expression and Localization of Villin, Fimbrin, and Myosin I in Differentiating Mouse F9 Teratocarcinoma Cells. Dev. Biol. 151:575-585 (1992).
33.                 Schmid, M.F., Jakana, J., Matsudaira, P.T., and Chiu, W. Effects of Radiation Damage with 400-kV Electrons on Frozen, Hydrated Actin Bundles. J. Struct. Biol. 108:62-68 (1992).
32.                 Matsudaira, P.T. Mapping Structural and Functional Domains in Actin-Binding Proteins. The Cytoskeleton: A Practical Approach (K. Carraway & C. Carraway, eds.) Oxford University Press, 73-98 (1992).
31.                 Collins, K., Sellers, J. and Matsudaira, P.T. Myosin I: A New Insight into the Mechanism and Cellular Significance of Actin-based Motility. Adv. Biophys. 27:221-6 (1991).
30.                 Schmid, M.F., Matsudaira, P.T., Jeng, T.-W., Jakana, J., Towns-Andrews, E., Bordas, J., and Chiu, W. Crystallographic Analysis of Acrosomal Bundle from Limulus Sperm. J. Mol. Biol. 221:711-725 (1991).
29.                 Collins, K., and Matsudaira, P.T. Differential Regulation of Vertebrate Myosins I and II. J. Cell Science, Supplement 14:11-16 (1991).
27.                 Matsudaira, P.T. Modular Organization of Actin Crosslinking Proteins. Trends in Biochem. Sciences 16:87-92 (1991).
26.                 de Arruda, M.V., Watson, S., Lin, C.-S., Leavitt, J., and Matsudaira, P.T. Fimbrin is a Homolog of the Cytoplasmic Phosphoprotein Plastin and has Domains Homologous with Calmodulin and Actin Gelation Proteins. J. Cell Biol. 111:1069-1079 (1990).
25.                 Büller, H.A., Kothe, M.J.C., Goldman, D.A., Grubman, S.A., Sasak, W.V., Matsudaira, P.T., Montgomery, R.K., and Grand, R.J. Coordinate Expression of Lactase-Phlorizin Hydrolase mRNA and Enzyme Levels in Rat Intestine During Development. J. Biol. Chem. 265:6978-6983 (1990).
24.                 Collins, K., Sellers, J.R., and Matsudaira, P.T. Calmodulin Dissociation Regulates Brush Border Myosin I (110kD-Calmodulin) Mechanochemical Activity in vitro. J. Cell Biol. 110:1137-1147 (1990).
23.                 Kodama, T., Freeman, M., Rohrer, L., Zabrecky, J., Matsudaira, P.T., and Krieger, M. Type I Macrophage Scavenger Receptor Contains a-Helical and Collagen-like Coiled Coils. Nature 343:531-535 (1990).
22.                 Zon, L.I., Tsai, S.-F., Burgess, S., Matsudaira, P.T., Bruns, G.A.P., and Orkin, S.H. The Major Human Erythroid DNA-Binding Protein (GF-1) Primary Sequence and Localization of the Gene to the X Chromosome. PNAS 87:668-672 (1990).
19.                 Ezzell, R.M., Chafel, M.M., and Matsudaira, P.T. Differential Localization of Villin and Fimbrin During Development of the Mouse Visceral Endoderm and Intestinal Epithelium. Development 106:407-419 (1989).
17.                 Janmey, P., and Matsudaira, P.T. Functional Comparison of Villin and Gelsolin: Effects of Ca2+, KCl, and Polyphosphoinositides. J. Biol. Chem. 263:16738-16743 (1988).
16.                 Matsudaira, P.T., and Janmey, P. Pieces in the Actin-Severing Protein Puzzle. Cell 54:139-140 (1988).
15.                 Bazari, W.L., Matsudaira, P.T., Wallek, M., Smeal, T., Jakes, R., and Ahmed, Y. The Villin Sequence and Peptide Map Identify Six Homologous Domains. PNAS 85: 4986-4990 (1988).
12.                 Matsudaira, P.T., Bordas J., and Koch, M.H.J. Synchrotron X-ray Diffraction Studies of Actin Structure During Polymerization. PNAS 84:3151-3155 (1987).
11.                 Matsudaira, P.T., Jakes, R., Cameron, L., and Atherton, F. Mapping the Cysteine Residues and Actin-binding Regions of Villin by Using Antisera to the Amino and Carboxyl Termini of the Molecule. PNAS 82:6788-6792 (1985).
10.                 Matsudaira, P.T., Jakes, R., and Walker, J.E. A Gelsolin-like Ca2+-dependent Actin-binding Domain in Villin. Nature 315:248-250 (1985).
9.                    Matsudaira, P.T. Structural and Functional Relationship between the Membrane and the Cytoskeleton in Brush Border Microvilli. CIBA Foundation Symposium 95 on Brush Border Membranes (Kenny, ed.). Pitman Books Ltd., London 233-244 (1983).
8.                    Matsudaira, P.T., Mandelkow, E., Renner, W., Hesterberg, L., Weber, K. Role of Fimbrin and Villin in Determining the Interfilament Distance of Actin Bundles. Nature 301:209-214 (1983).
7.                    Glenny, J.R. Jr., Matsudaira, P.T., Weber, K. Calcium Control of the Intestinal Microvillus Cytoskeleton. Calcium and Cell Function (Cheung, ed.). Academic Press 3:357-380 (1982).
6.                    Matsudaira, P.T. and Burgess, D.R. Structure and Function of the Brush Border Cytoskeleton. Cold Spring Harbor Symposium for Quantitative Biology 46:845-854 (1982).
5.                    Matsudaira, P.T., and Burgess, D.R. Organization of the Cross-Filaments in Intestinal Microvilli. J. Cell Biol. 92:657-664 (1982).
4.                    Matsudaira, P.T., and Burgess, D.R. Partial Reconstruction of the Microvillus Core Bundle: Characterization of Villin as a Ca++-dependent, Actin-Bundling/ Depolymerizing Protein. J. Cell Biol. 92:648-656 (1982).
3.                    Glenney, J.R. Jr., Kaulfus, P., Matsudaira, P.T., and Weber, K. F-Actin Binding and Bundling Properties of Fimbrin, a Major Cytoskeletal Protein of Microvillus Core Filaments. J. Biol. Chem. 256:9283-9289 (1981).
2.                    Matsudaira, P.T., and Burgess, D.R. Identification and Organization of the Components in the Isolated Microvillus Cytoskeleton. J. Cell Biol. 83:667-673 (1979).

On Microanalytical Methods

120.              Zhong, J.Q., Freyzon, Y., Ehrlich, D.J., Matsudaira, P., Enhanced detection sensitivity using novel solid-phase incorporated affinity fluorescent protein biosensor. Biomol.Eng. 21:67-72 (2004).
112.              Vazquez, M., McKinley, G., Mitnik-Gankin, L., Desmarais, S., Matsudaira, P.T., Ehrlich, D. Electrophoresis using Ultra High-Voltages. J Chromatogr B Analyt Technol Biomed Life Sci 163:779-780 (2002).
111.              Vazquez, M., McKinley, G., Mitnik-Gankin, L., Desmarais, S., Matsudaira, P.T., Ehrlich, D. Electrophoretic Injection within Microdevices. Analytical Chemistry 74:1952-1961 (2002).
110.              Mitnik-Gankin, L., Carey, L., Burger, R., Desmarais, S., Koutny, L., Wernet, O., Matsudaira, P.T., Ehrlich, D. High-Speed Analysis of Multiplexed Short Tandem repeats with an Electrophorectic Microdevice. Electrophoresis 23:719-726 (2002).
109.              Chiou, J., Matsudaira, P.T., Ehrlich, D. Thirty-Cycle Temperature Optimization of a Closed-Cycle Capillary PCR Machine. BioTechniques 33:557-564 (2002).
109.              Chiou, J., Matsudaira, P.T., Ehrlich, D. Thirty-Cycle Temperature Optimization of a Closed-Cycle Capillary PCR Machine. BioTechniques 33:557-564 (2002).
107.              Vazquez, M., Schmalzing, D., Matsudaira, P., Ehrlich, D., McKinley, G. Shear-Induced Degradation of LPA Solutions during Pre-Electrophoretic Loading. Analytical Chem., 73:3035-3044 (2001).
106.              Chiou, J., Matsudaira, P., Sonin, A., and Ehrlich, D. A Closed-Cycle Capillary Polymerase Chain Reaction Machine. Analytical Chem., 73:2018-2021 (2001).
102.              Schmalzing, D., Belenky, A., Novotny, M.A., Koutny, L., Salas-Solano, O., El-Difrawy, S., Adourian, A., Matsudaira, P., and Ehrlich, D. Microchip Electrophoresis: A Method for High-Speed SNP Detection, Nucleic Acid Research 28:e43 (2000).
101.              Salas-Solano, O., Schmalzing, D., Koutny, L., Buonocore, S., Adourian, A., Matsudaira, P.T., and Ehrlich, D.J., Optimization of High-Performance DNA Sequencing on Short Microfabricated Electrophoretic Devices, Analytical Chemistry 72:3129-3137 (2000).
98.                 Koutny, L., Schmalzing, D., Salas-Solano, O., El-Difrawy, S., Adourian, A., Buonocore, S., Abbey, K., McEwan, P., Matsudaira, P.T., and Ehrlich, D.J. Eight Hundred-Base Sequencing in a Microfabricated Electrophoretic Device, Analytical Chemistry, 72:3388-3391 (2000).
97.                 Schmalzing, D., Koutny, L., Adourian, A., Chisholm, D., Matsudaira, P.T., and Ehrlich, D.J. Genotyping by Microdevice Electrophoresis, Methods in Molecular Biology, Capillary Electrophoresis of Nucleic Acids, Humana Press, Vol. 2, 163-173 (2000).
96.                 Schmalzing, D., Koutny, L., Salas-Solano, O., Adourian, A., Matsudaira, P.T., and Ehrlich, D.J. Recent Developments in DNA Sequencing by Capillary and Microdevice Electrophoresis. A Review. Electrophoresis 20:3066-3077 (1999).
95.                 Schmidt, M.F., Sherman, M.B., Matsudaira, P.T., Tsuruta, H., and Chiu, W. Scaling Structure Factor Amplitudes in Electron Cryomicroscopy using X-ray Solution Scattering. J. Structural Biol. 128:51-57 (1999).
94.                 Schmalzing, D., Tsao, N., Koutny, L., Chisholm, D., Srivastava, A., Adourian, A., Linton, L., McEwan, P., Matsudaira, P.T., and Ehrlich, D. Toward Real-World Sequencing using Microdevices. Genome Research 9:853-858 (1999).
92.                 Ehrlich, D.J., and Matsudaira, P.T. Microfluidic Devices for DNA Analysis. Trends in Biotechnology 17:315-319 (1999).
91.                 Schmalzing, D., Koutny, L., Chisholm, D., Adourian, A., Matsudaira, P.T., and Ehrlich, D. Two-color Multiplexed Analysis of Eight STR loci with an Electrophoretic Micro-device. Analytical Biochemistry 270: 148-152 (1999).
89.                 Schmalzing, D., Koutny, L., Adourian, A., Matsudaira, P.T., and Ehrlich, D. High Speed STR Analysis on Microfabricated Electrophoretic Devices. Published in Proceedings from the Ninth International Symposium on Human Identification, Promega (1998).
86.                 Schmalzing, D., Adourian, A., Koutny, L., Ziaugra, L., Matsudaira, P.T., and Ehrlich, D.J. DNA Sequencing on Microfabricated Electrophoretic Devices, Analytical Chem. 70:2303-2310 (1998).
85.                 Schmalzing, D., Koutny, L., Adourian, A., Matsudaira, P.T., and Ehrlich, D. Ultrafast STR Analysis by Microchip Gel Electrophoresis. Published in Proceedings from the Eighth International Symposium on Human Identification, Promega (1997).
82.                 Schmalzing, D., Koutny, L., Adourian, A., Belgrader, P., Matsudaira, P.T., and Ehrlich, D.J. DNA Typing in Thirty Seconds with a Microfabricated Device, PNAS 94:10273-10278 (1997).
61.                 Ehrlich, D., and Matsudaira, P.T. BioMEMS, Microelectromechanical Systems in Biology. Advanced Research Projects Agency, Dept. of Defense (1995).
42.                 A Practical Guide to Protein and Peptide Purification for Microsequencing (P.T. Matsudaira, ed.). Academic Press, Inc. 2nd Edition June (1993).
28.                 Matsudaira, P.T. Comparison of the Blotting Efficiencies of Various PVDF Membranes. Methods in Protein Sequence Analysis (Jörnvall, Höög & Gustavsson, eds.) Birkhäuser Verlag, 115-121 (1991).
21.                 Matsudaira, P.T. Purification of Proteins and Peptides for Limited N-terminal Sequence Analysis. Methods in Enzymology (M. Deutscher, ed.). Academic Press, Vol. 182 [45] (1989).
20.                 A Practical Guide to Protein and Peptide Purification for Microsequencing (P.T. Matsudaira, ed.). Academic Press, Inc. November (1989).
18.                 Matsudaira, P.T. Initial and Repetitive Yields from Protein Blotted on PVDF Membranes. Seventh International Conference on Methods in Protein Sequence Analysis (B. Wittman-Liebold, ed.). Springer-Verlag, July 234-239 (1989).
14.                 Legendre, J., and Matsudaira, P.T. Direct Protein Microsequencing from Immobilon-P Transfer Membrane. BioTechniques 6:154-159 (1988).
13.                 Matsudaira, P.T. Sequence from Picomole Quantities of Proteins Electroblotted onto Polyvinylidene Difluoride Membranes. J. Biol. Chem. 262:10035-10038 (1987).
1.                    Matsudaira, P.T., and Burgess, D.R. SDS Microlab Linear Gradient Polyacrylamide-Gel Electrophoresis. Anal. Bioc. 87:386-396 (1978).

 

 

 

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